The following list is no particular order.
R Programming for Data Science, Roger D Peng
Introduction to R, USGS Website
An Introduction to Statistical Learning with Applications in R, Gareth James
Many Resources on R including downloadable books
R Programming, John Hopkins University (on Coursera)
Data Science: R Basics, A course by Harvard University (on edX)
Please feel free to recommend other books in the Comment box below. Especially books on R with applications to social sciences.
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